Advisory Published

USN-4087-1: BWA vulnerability

First published: Tue Aug 06 2019(Updated: )

It was discovered that Burrows-Wheeler Aligner (BWA) mishandled certain crafted .alt files. An attacker could use this vulnerability to cause a denial of service (crash) or possibly execute arbitrary code.

Affected SoftwareAffected VersionHow to fix
All of
ubuntu/bwa<0.7.17-3~ubuntu0.19.04.1
0.7.17-3~ubuntu0.19.04.1
Ubuntu OpenSSH Client=19.04
All of
ubuntu/bwa<0.7.17-1ubuntu0.1
0.7.17-1ubuntu0.1
Ubuntu OpenSSH Client=18.04

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Child vulnerabilities

(Contains the following vulnerabilities)

Frequently Asked Questions

  • What is the severity of USN-4087-1?

    USN-4087-1 has a high severity rating due to the potential for denial of service or arbitrary code execution.

  • How does USN-4087-1 affect the Burrows-Wheeler Aligner (BWA)?

    USN-4087-1 affects BWA by mishandling crafted .alt files, which can lead to a crash or compromise.

  • How do I fix USN-4087-1?

    To fix USN-4087-1, upgrade BWA to version 0.7.17-3~ubuntu0.19.04.1 on Ubuntu 19.04 or 0.7.17-1ubuntu0.1 on Ubuntu 18.04.

  • Can USN-4087-1 be exploited remotely?

    Yes, USN-4087-1 can potentially be exploited remotely by an attacker using specially crafted .alt files.

  • What are the affected versions in USN-4087-1?

    The affected versions in USN-4087-1 include BWA versions prior to 0.7.17-3~ubuntu0.19.04.1 and 0.7.17-1ubuntu0.1.

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